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feat(gnn-v2): Comprehensive GNN v2 implementation with cognitive substrate#43

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ruvnet merged 4 commits intomainfrom
feature/gnn-v2-implementation-plan
Dec 2, 2025
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feat(gnn-v2): Comprehensive GNN v2 implementation with cognitive substrate#43
ruvnet merged 4 commits intomainfrom
feature/gnn-v2-implementation-plan

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@ruvnet ruvnet commented Dec 2, 2025

Summary

  • Add comprehensive GNN v2 implementation plans with neuromorphic HNSW integration
  • Publish 9 cognitive substrate crates to crates.io (exo-ai-2025)
  • Add neuromorphic HNSW v2.3 with Spiking Neural Network (SNN) integration
  • Include spiking neural network examples and psycho-symbolic integration updates

Key Features

  • Neuromorphic HNSW v2.3: WASM-SIMD optimized vector search with SNN integration
  • Cognitive Substrate Crates: 9 new crates for exo-ai-2025 cognitive computing
  • Spiking Neural Networks: LIF and Izhikevich neuron models with STDP learning
  • GNN v2 Architecture: Comprehensive implementation plans for graph neural networks

Test plan

  • Verify crate compilation with cargo check
  • Run existing test suite with npm test
  • Test WASM builds if applicable
  • Validate spiking network examples

🤖 Generated with Claude Code

ruvnet and others added 4 commits December 1, 2025 21:16
Add 22 detailed planning documents for 19 advanced GNN features:

Tier 1 (Immediate - 3-6 months):
- GNN-Guided HNSW Routing (+25% QPS)
- Incremental Graph Learning/ATLAS (10-100x faster updates)
- Neuro-Symbolic Query Execution (hybrid neural + logical)

Tier 2 (Medium-Term - 6-12 months):
- Hyperbolic Embeddings (Poincaré ball model)
- Degree-Aware Adaptive Precision (2-4x memory reduction)
- Continuous-Time Dynamic GNN (concept drift detection)

Tier 3 (Research - 12+ months):
- Graph Condensation (10-100x smaller graphs)
- Native Sparse Attention (8-15x GPU speedup)
- Quantum-Inspired Attention (long-range dependencies)

Novel Innovations (10 experimental features):
- Gravitational Embedding Fields, Causal Attention Networks
- Topology-Aware Gradient Routing, Embedding Crystallization
- Semantic Holography, Entangled Subspace Attention
- Predictive Prefetch Attention, Morphological Attention
- Adversarial Robustness Layer, Consensus Attention

Includes comprehensive regression prevention strategy with:
- Feature flag system for safe rollout
- Performance baseline (186 tests + 6 search_v2 tests)
- Automated rollback mechanisms

Related to #38

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
## New Crate: micro-hnsw-wasm v2.3.0
- Published to crates.io: https://crates.io/crates/micro-hnsw-wasm
- 11.8KB WASM binary with 58 exported functions
- Neuromorphic vector search combining HNSW + Spiking Neural Networks

### Core Features
- HNSW graph-based approximate nearest neighbor search
- Multi-distance metrics: L2, Cosine, Dot product
- GNN extensions: typed nodes, edge weights, neighbor aggregation
- Multi-core sharding: 256 cores × 32 vectors = 8K total

### Spiking Neural Network (SNN)
- LIF (Leaky Integrate-and-Fire) neurons with membrane dynamics
- STDP (Spike-Timing Dependent Plasticity) learning
- Spike propagation through graph topology
- HNSW→SNN bridge for similarity-driven neural activation

### Novel Neuromorphic Features (v2.3)
- Spike-Timing Vector Encoding (rate-to-time conversion)
- Homeostatic Plasticity (self-stabilizing thresholds)
- Oscillatory Resonance (40Hz gamma synchronization)
- Winner-Take-All Circuits (competitive selection)
- Dendritic Computation (nonlinear branch integration)
- Temporal Pattern Recognition (spike history matching)
- Combined Neuromorphic Search pipeline

### Performance Optimizations
- 5.5x faster SNN tick (2,726ns → 499ns)
- 18% faster STDP learning
- Pre-computed reciprocal constants
- Division elimination in hot paths

### Documentation & Organization
- Reorganized docs into subdirectories (gnn/, implementation/, publishing/, status/)
- Added comprehensive README with badges, SEO, citations
- Added benchmark.js and test_wasm.js test suites
- Added DEEP_REVIEW.md with performance analysis
- Added Verilog RTL for ASIC synthesis

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
Published the complete EXO-AI 2025 cognitive substrate to crates.io:

Crates published (v0.1.0):
- exo-core: IIT consciousness (Φ) measurement & Landauer thermodynamics
- exo-temporal: Temporal memory coordinator with causal structure
- exo-hypergraph: Hypergraph substrate for higher-order reasoning
- exo-manifold: SIREN networks for continuous manifold deformation
- exo-exotic: 10 exotic experiments (Strange Loops, Dreams, Free Energy, etc.)
- exo-federation: Post-quantum federated cognitive mesh
- exo-backend-classical: SIMD-accelerated classical compute backend
- exo-wasm: Browser & edge WASM deployment
- exo-node: Node.js bindings via NAPI-RS

Changes:
- Updated all Cargo.toml files with publishing metadata
- Added crates.io, docs.rs, and license badges to READMEs
- Added GitHub and ruv.io links to all documentation
- Created README.md files for crates that were missing them
- Updated dependency references for crates.io publishing

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
…ral package

- Add meta-cognition SNN examples with AgentDB integration
- Include hyperbolic attention, SIMD optimization, and vector search demos
- Add spiking-neural package foundation
- Update psycho-symbolic-integration package

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
@ruvnet ruvnet merged commit 8e7a6d8 into main Dec 2, 2025
11 checks passed
ruvnet added a commit that referenced this pull request Feb 20, 2026
…trate (#43)

* docs: Add comprehensive GNN v2 implementation plans

Add 22 detailed planning documents for 19 advanced GNN features:

Tier 1 (Immediate - 3-6 months):
- GNN-Guided HNSW Routing (+25% QPS)
- Incremental Graph Learning/ATLAS (10-100x faster updates)
- Neuro-Symbolic Query Execution (hybrid neural + logical)

Tier 2 (Medium-Term - 6-12 months):
- Hyperbolic Embeddings (Poincaré ball model)
- Degree-Aware Adaptive Precision (2-4x memory reduction)
- Continuous-Time Dynamic GNN (concept drift detection)

Tier 3 (Research - 12+ months):
- Graph Condensation (10-100x smaller graphs)
- Native Sparse Attention (8-15x GPU speedup)
- Quantum-Inspired Attention (long-range dependencies)

Novel Innovations (10 experimental features):
- Gravitational Embedding Fields, Causal Attention Networks
- Topology-Aware Gradient Routing, Embedding Crystallization
- Semantic Holography, Entangled Subspace Attention
- Predictive Prefetch Attention, Morphological Attention
- Adversarial Robustness Layer, Consensus Attention

Includes comprehensive regression prevention strategy with:
- Feature flag system for safe rollout
- Performance baseline (186 tests + 6 search_v2 tests)
- Automated rollback mechanisms

Related to #38

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

* feat(micro-hnsw-wasm): Add neuromorphic HNSW v2.3 with SNN integration

## New Crate: micro-hnsw-wasm v2.3.0
- Published to crates.io: https://crates.io/crates/micro-hnsw-wasm
- 11.8KB WASM binary with 58 exported functions
- Neuromorphic vector search combining HNSW + Spiking Neural Networks

### Core Features
- HNSW graph-based approximate nearest neighbor search
- Multi-distance metrics: L2, Cosine, Dot product
- GNN extensions: typed nodes, edge weights, neighbor aggregation
- Multi-core sharding: 256 cores × 32 vectors = 8K total

### Spiking Neural Network (SNN)
- LIF (Leaky Integrate-and-Fire) neurons with membrane dynamics
- STDP (Spike-Timing Dependent Plasticity) learning
- Spike propagation through graph topology
- HNSW→SNN bridge for similarity-driven neural activation

### Novel Neuromorphic Features (v2.3)
- Spike-Timing Vector Encoding (rate-to-time conversion)
- Homeostatic Plasticity (self-stabilizing thresholds)
- Oscillatory Resonance (40Hz gamma synchronization)
- Winner-Take-All Circuits (competitive selection)
- Dendritic Computation (nonlinear branch integration)
- Temporal Pattern Recognition (spike history matching)
- Combined Neuromorphic Search pipeline

### Performance Optimizations
- 5.5x faster SNN tick (2,726ns → 499ns)
- 18% faster STDP learning
- Pre-computed reciprocal constants
- Division elimination in hot paths

### Documentation & Organization
- Reorganized docs into subdirectories (gnn/, implementation/, publishing/, status/)
- Added comprehensive README with badges, SEO, citations
- Added benchmark.js and test_wasm.js test suites
- Added DEEP_REVIEW.md with performance analysis
- Added Verilog RTL for ASIC synthesis

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

* feat(exo-ai-2025): Publish 9 cognitive substrate crates to crates.io

Published the complete EXO-AI 2025 cognitive substrate to crates.io:

Crates published (v0.1.0):
- exo-core: IIT consciousness (Φ) measurement & Landauer thermodynamics
- exo-temporal: Temporal memory coordinator with causal structure
- exo-hypergraph: Hypergraph substrate for higher-order reasoning
- exo-manifold: SIREN networks for continuous manifold deformation
- exo-exotic: 10 exotic experiments (Strange Loops, Dreams, Free Energy, etc.)
- exo-federation: Post-quantum federated cognitive mesh
- exo-backend-classical: SIMD-accelerated classical compute backend
- exo-wasm: Browser & edge WASM deployment
- exo-node: Node.js bindings via NAPI-RS

Changes:
- Updated all Cargo.toml files with publishing metadata
- Added crates.io, docs.rs, and license badges to READMEs
- Added GitHub and ruv.io links to all documentation
- Created README.md files for crates that were missing them
- Updated dependency references for crates.io publishing

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

* feat: Add meta-cognition spiking neural network demos and spiking-neural package

- Add meta-cognition SNN examples with AgentDB integration
- Include hyperbolic attention, SIMD optimization, and vector search demos
- Add spiking-neural package foundation
- Update psycho-symbolic-integration package

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: Claude <noreply@anthropic.com>
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